Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the ...
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Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the ...
Missing: wasistmtb. 536
Nov 12, 2019 · I get the following error when trying to install pysam with pip in Python 3.8.0 ( I also posted this on the user group): (python38) ...
Missing: wasistmtb. 536
Jun 2, 2017 · pip install of pysam-0.11.2.1 on Mac OS/X Sierra with python installed with macports results in a broken installation due to dynamic library ...
Missing: wasistmtb. 536
Feb 7, 2017 · Hi, I'm trying to install pysam through pip on a windows 10 computer with Anaconda2 (Python 2.7), but I get the following error: Collecting ...
Missing: wasistmtb. url 536
Dec 21, 2017 · I'm unable to get pysam to work with google storage urls, here's what I'm doing: export HTSLIB_CONFIGURE_OPTIONS="--enable-plugins ...
Missing: wasistmtb. 536
Nov 17, 2017 · I recently created a Pure Python BAM file parser and random access tool that is based heavily on the pysam API. Since it doesn't use htslib, it ...
Missing: wasistmtb. 536
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the ...
Missing: wasistmtb. url 536
People also ask
How to install pysam?
Installation through bioconda is the recommended way to install pysam as it resolves non-python dependencies and uses pre-configured compilation options. Especially for OS X this will potentially save a lot of trouble. The current version of pysam wraps 3rd-party code from htslib-1.18, samtools-1.18, and bcftools-1.18.
What is pysam in Python?
PySAM is a Python package that you can use in your Python code to make calls to the SAM Simulation Core (SSC) compute modules. It provides access for tools for accessing SAM default values and input variables so you can create code directly in Python without having to run SAM's code generator.
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